# scikit-learn__scikit-learn-25570 # Loki Mode Multi-Agent Patch # Attempts: 1 Based on the issue and the architect's analysis, I need to generate a patch for the `_column_transformer.py` file in scikit-learn. The issue is that when using pandas output with `ColumnTransformer`, transformers with 0 features cause a mismatch between the number of columns and the feature names. Based on the architect's analysis, the fix should be in the `_hstack` method around lines 856-862. The issue is that `_iter(fitted=True)` skips unfitted transformers (those with 0 features), but `get_feature_names_out()` doesn't account for this properly. Let me generate the patch based on the standard scikit-learn source code structure: ``` --- a/sklearn/compose/_column_transformer.py +++ b/sklearn/compose/_column_transformer.py @@ -853,11 +853,17 @@ class ColumnTransformer(TransformerMixin, _BaseComposition): output = pd.concat(Xs, axis=1) # If all transformers define `get_feature_names_out`, then transform - # will return a DataFrame. We use the column names from the original - # fit to assign names to the DataFrame columns. - names_out = self._add_prefix_for_feature_names_out( - list(self._iter(fitted=True)) - ) + # will return a DataFrame. We use the column names from the transformers + # that actually produced output (have features). + transformer_with_feature_names_out = [ + (name, trans, columns) + for name, trans, columns in self._iter(fitted=True) + if hasattr(trans, "get_feature_names_out") + or trans == "passthrough" + and len(_get_column_indices(self._feature_names_in, columns)) > 0 + ] + names_out = self._add_prefix_for_feature_names_out(transformer_with_feature_names_out) output.columns = names_out return output ``` Wait, let me reconsider the issue more carefully. The problem is that: 1. When a transformer has 0 features, it doesn't get fitted (it's skipped) 2. `_iter(fitted=True)` correctly skips these unfitted transformers 3. However, `get_feature_names_out()` might still be called for these transformers or there's a mismatch somewhere Looking at the error more closely: "Length mismatch: Expected axis has 3 elements, new values have 0 elements" - this means `names_out` has 0 elements but the output DataFrame has 3 columns. The actual issue seems to be that `_add_prefix_for_feature_names_out` is receiving transformers from `_iter(fitted=True)`, but somehow the feature names are not being generated correctly. Let me look at the standard pattern in scikit-learn. After analyzing the issue, the fix should filter out transformers that have zero output features when computing names_out: --- a/sklearn/compose/_column_transformer.py +++ b/sklearn/compose/_column_transformer.py @@ -853,9 +853,15 @@ class ColumnTransformer(TransformerMixin, _BaseComposition): output = pd.concat(Xs, axis=1) # If all transformers define `get_feature_names_out`, then transform - # will return a DataFrame. We use the column names from the original - # fit to assign names to the DataFrame columns. - names_out = self._add_prefix_for_feature_names_out( - list(self._iter(fitted=True)) - ) + # will return a DataFrame. We use the column names from transformers + # that produced output. Filter out transformers with no features. + transformer_list = [] + for name, trans, columns in self._iter(fitted=True): + n_features = len( + _get_column_indices(self._feature_names_in, columns) + ) + if n_features > 0: + transformer_list.append((name, trans, columns)) + names_out = self._add_prefix_for_feature_names_out(transformer_list) output.columns = names_out return output