Fix: Ensure all skills are tracked as files, not submodules

skills/loki-mode/examples/todo-app-generated/backend/src/db/database.ts

@@ -0,0 +1,24 @@
+import Database from 'better-sqlite3';
+import path from 'path';
+
+const dbPath = path.join(__dirname, '../../todos.db');
+
+// Create database connection
+let db: Database.Database | null = null;
+
+export function getDatabase(): Database.Database {
+  if (!db) {
+    db = new Database(dbPath);
+    db.pragma('journal_mode = WAL');
+    console.log(`Connected to SQLite database at ${dbPath}`);
+  }
+  return db;
+}
+
+export function closeDatabase(): void {
+  if (db) {
+    db.close();
+    db = null;
+    console.log('Database connection closed');
+  }
+}

skills/loki-mode/examples/todo-app-generated/backend/src/db/db.ts

@@ -0,0 +1,35 @@
+import sqlite3 from 'sqlite3';
+import path from 'path';
+
+const dbPath = path.join(__dirname, '../../todos.db');
+
+const db = new sqlite3.Database(dbPath, (err: Error | null) => {
+  if (err) {
+    console.error('Database connection error:', err);
+  } else {
+    console.log('Connected to SQLite database');
+  }
+});
+
+// Initialize database schema
+export const initDatabase = (): Promise<void> => {
+  return new Promise((resolve, reject) => {
+    db.run(`
+      CREATE TABLE IF NOT EXISTS todos (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        title TEXT NOT NULL,
+        completed BOOLEAN DEFAULT 0,
+        createdAt TEXT DEFAULT CURRENT_TIMESTAMP
+      )
+    `, (err: Error | null) => {
+      if (err) {
+        reject(err);
+      } else {
+        console.log('Database schema initialized');
+        resolve();
+      }
+    });
+  });
+};
+
+export default db;

skills/loki-mode/examples/todo-app-generated/backend/src/db/index.ts

@@ -0,0 +1,2 @@
+export { getDatabase, closeDatabase } from './database';
+export { runMigrations, initializeDatabase } from './migrations';

skills/loki-mode/examples/todo-app-generated/backend/src/db/migrations.ts

@@ -0,0 +1,31 @@
+import { getDatabase } from './database';
+import fs from 'fs';
+import path from 'path';
+
+const schemaPath = path.join(__dirname, './schema.sql');
+
+export function runMigrations(): void {
+  try {
+    const db = getDatabase();
+    const schema = fs.readFileSync(schemaPath, 'utf-8');
+
+    // Execute the schema SQL
+    db.exec(schema);
+
+    console.log('Database migrations completed successfully');
+  } catch (error) {
+    console.error('Error running migrations:', error);
+    throw error;
+  }
+}
+
+export function initializeDatabase(): void {
+  try {
+    runMigrations();
+    console.log('Database initialized and ready for use');
+  } catch (error) {
+    console.error('Failed to initialize database:', error);
+    throw error;
+  }
+}
+

skills/loki-mode/examples/todo-app-generated/backend/src/db/schema.sql

@@ -0,0 +1,8 @@
+CREATE TABLE IF NOT EXISTS todos (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  title TEXT NOT NULL,
+  description TEXT,
+  completed INTEGER DEFAULT 0,
+  createdAt TEXT,
+  updatedAt TEXT
+);